Our Publications

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Ramesh, M. and Thankaraj, S.R., 2024. Genomic analysis and antibiotic resistance profiling of Bacillus amyloliquefaciens AUPP2: implication for biocontrol agent against the fruit rot of banana. Journal of Plant Pathology, pp.1-13. [View]

Balasubramanian, S., Haneen, M.A., Sharma, G. and Perumal, E., 2024. Acute copper oxide nanoparticles exposure alters zebrafish larval microbiome. Life Sciences, 336, p.122313. [View]

Alagarsamy, M., Karuppan, S., Amal, T.C. and Markkandan, K., 2024. Sequencing and analysis of the complete mitochondrial genome of Amrasca biguttula biguttula Ishida, 1913 (Hemiptera: Cicadellidae: Typhlocybinae: Empoascini). Mitochondrial DNA Part B, 9(6), pp.725-728. [View]

Koundinya, A.V.V., Muthusamy, S.K., Ajeesh, B.R., Mohan, C., Sreekumar, J., Pulapet, S., Markkandan, K. and Sheela, M.N., 2024. Elucidation of novel drought-responsive genes from tuber transcriptome of cassava under water deficit stress. South African Journal of Botany, 169, pp.255-267. [View]

Narayanan, M.B., Mohan, S.V.G., Subramanyam, P., Venkatachalam, R. and Markkandan, K., 2023. Identification of Causal Gene-Specific SNP Markers for the Development of Gynoecious Hybrids in Cucumber (Cucumis sativa L.) Using the PathoLogic Algorithm. Horticulturae, 9(3), p.389. [View]

Ramakrishnan, P., Ariyan, M., Rangasamy, A., Rajasekaran, R., Ramasamy, K., Murugaiyan, S. and Janahiraman, V., 2023. Draft Genome Sequence of Enterobacter cloacae S23 a Plant Growth-promoting Passenger Endophytic Bacterium Isolated from Groundnut Nodule Possesses Stress Tolerance Traits. Current Genomics, 24(1), p.36. [View]

Lee, I., Kim, E., Choi, S., Kim, D., Hong, W., Choi, J., Choi, H., Kim, J., Sable, G.A., Markkandan, K. and Lim, D., 2021. A Raf-like kinase is required for smoke-induced seed dormancy in Arabidopsis thaliana. Proceedings of the National Academy of Sciences, 118(14). [View]

Kim, S.M., Markkandan, K., Lee, J.Y., Kim, G.W. and Yoo, J.Y., 2020. Transcriptome Profiling Associated with Carcass Quality of Loin Muscles in Crossbred Pigs. Animals, 10(8), p.1279. [View]

Yoo, S.I., Lee, H.Y., Markkandan, K., Moon, S., Ahn, Y.J., Ji, S., Ko, J., Kim, S.J., Ryu, H. and Hong, C.P., 2019. Comparative transcriptome analysis identified candidate genes involved in mycelium browning in Lentinula edodes. BMC genomics, 20(1), p.121. [View]

Kim, M., Markkandan, K., Han, N.Y., Park, J.M., Lee, J.S., Lee, H. and Sohn, Y.C., 2019. Neural ganglia transcriptome and peptidome associated with sexual maturation in female pacific abalone (Haliotis discus hannai). Genes, 10(4), p.268. [View]

Lee, J.H., Markkandan, K., Kim, I.W., Kim, S.Y., Seo, M., Kim, M.A., Kim, S.H. and Hwang, J.S., 2019. De novo assembly and functional annotation of the emma field cricket (Teleogryllus emma) transcriptome. Journal of Asia-Pacific Entomology, 22(1), pp.1-5. [View]

Saha, S., Jeon, B.H., Kurade, M.B., Chatterjee, P.K., Chang, S.W., Markkandan, K., Salama, E.S., Govindwar, S.P. and Roh, H.S., 2019. Microbial acclimatization to lipidic-waste facilitates the efficacy of acidogenic fermentation. Chemical Engineering Journal, 358, pp.188-196. [View]

Markkandan, K., Lim, H.J., Lee, D.J., Shin, I.G., Yoo, S.I., Dang, C., Hong, C.P. and Ahn, K., 2018. Data on transcriptome profiling of circulating microRNAs in dairy cattle. Data in brief, 21, pp.775-778. [View]

Markkandan, K., Ahn, K., Lee, D.J., Kim, T.I., Dang, C., Hong, S.E., Yoon, H.B., Lim, H.J. and Hong, C.P., 2018. Profiling and identification of pregnancy-associated circulating microRNAs in dairy cattle. Genes & genomics, 40(10), pp.1111-1117. [View]

Choi, B.S., Kim, Y.J., Markkandan, K., Koo, Y.J., Song, J.T. and Seo, H.S., 2018. GW2 functions as an E3 ubiquitin ligase for rice expansin-like 1. International journal of molecular sciences, 19(7), p.1904. [View]

Lee, J., Lim, J.H., Park, J., Youn, S.H., Oh, H.J., Kim, J.H., Kim, M.K., Cho, H., Yoon, J.E., Kim, S. and Markkandan, K., 2018. First Investigation of Microbial Community Composition in the Bridge (Gadeok Channel) between the Jinhae-Masan Bay and the South Sea of Korea. Ocean Science Journal, 53(2), pp.251-260. [View]

Hwang, J.Y., Markkandan, K., Kwon, M.G., Seo, J.S., Yoo, S.I., Hwang, S.D., Son, M.H. and Park, J., 2018. Transcriptome analysis of olive flounder (Paralichthys olivaceus) head kidney infected with moderate and high virulent strains of infectious viral hemorrhagic septicaemia virus (VHSV). Fish & shellfish immunology, 76, pp.293-304. [View]

Markkandan, K., Yoo, S.I., Cho, Y.C. and Lee, D.W., 2018. Genome-Wide Identification of Insertion and Deletion Markers in Chinese Commercial Rice Cultivars, Based on Next-Generation Sequencing Data. Agronomy, 8(4), p.36. [View]

Hwang, J.Y., Markkandan, K., Han, K., Kwon, M.G., Seo, J.S., Yoo, S.I., Hwang, S.D., Ji, B.Y., Son, M.H. and Park, J.H., 2018. Temperature-dependent immune response of olive flounder (Paralichthys olivaceus) infected with viral hemorrhagic septicemia virus (VHSV). Genes & genomics, 40(3), pp.315-320. [View]

Ahn, Y.J., Markkandan, K., Baek, I.P., Mun, S., Lee, W., Kim, H.S. and Han, K., 2018. An efficient and tunable parameter to improve variant calling for whole genome and exome sequencing data. Genes & genomics, 40(1), pp.39-47. [View]

Mun, S., Kim, Y.J., Markkandan, K., Shin, W., Oh, S., Woo, J., Yoo, J., An, H. and Han, K., 2017. The whole-genome and transcriptome of the Manila clam (Ruditapes philippinarum). Genome biology and evolution, 9(6), pp.1487-1498. [View]

Sohn, H.B., Kim, S.J., Hwang, T.Y., Park, H.M., Lee, Y.Y., Markkandan, K., Lee, D., Lee, S., Hong, S.Y., Song, Y.H. and Koo, B.C., 2017. Barcode system for genetic identification of soybean [Glycine max (L.) Merrill] cultivars using InDel markers specific to dense variation blocks. Frontiers in plant science, 8, p.520. [View]

Kim, I.W., Markkandan, K., Lee, J.H., Subramaniyam, S., Yoo, S., Park, J. and Hwang, J.S., 2016. Transcriptome profiling and in silico analysis of the antimicrobial peptides of the grasshopper Oxya chinensis sinuosa. J Microbiol Biotechnol, 26, pp.1863-1870. [View]

Shin, Y., Jung, H.J., Jung, M., Yoo, S., Subramaniyam, S., Markkandan, K., Kang, J.M., Rai, R., Park, J. and Kim, J.J., 2016. Discovery of gene sources for economic traits in Hanwoo by whole-genome resequencing. Asian-Australasian journal of animal sciences, 29(9), p.1353. [View]

Nam, B.H., Jung, M., Subramaniyam, S., Yoo, S.I., Markkandan, K., Moon, J.Y., Kim, Y.O., Kim, D.G., An, C.M., Shin, Y. and Jung, H.J., 2016. Transcriptome analysis revealed changes of multiple genes involved in Haliotis discus hannai innate immunity during Vibrio parahemolyticus infection. PloS one, 11(4). [View]

Kesavan, M., Song, J.T. and Seo, H.S., 2013. Seed size: a priority trait in cereal crops. Physiologia Plantarum, 147(2), pp.113-120. [View]