Sudharsan, R., Kannan, C., Vanitha, A., Praveen, A., Sowmya, P., Shankar, J.G., Kesavan, M., Krishnamoorthy, R., Alshuniaber, M.A., Osman, M.A. and Gatasheh, M.K., 2026. Genomic insights into endophytic Bacillus amyloliquefaciens BBE16 and Bacillus velezensis BBE18 reveal their biocontrol potential against Fusarium wilt in banana. Physiological and Molecular Plant Pathology, p.103144.
Vanitha, A., Sudharsan, R., Kannan, C., Praveen, A., Sowmya, P., Gowrishankar, J., Kesavan, M., Ramya, M., Krishnamoorthy, R., Alshuniaber, M.A. and Osman, M.A., 2026. First report on whole genome sequencing of Chaetomium strumarium BRFC4 and its antagonistic activity against Fusarium wilt of banana. Phytochemistry, p.114807.
Sudharsan, R., Vanitha, A., Kannan, C., Jeevanantham, S., Reddy, N.H.S., Sowmya, P., Shankar, J.G., Kesavan, M., Krishnamoorthy, R., Alshuniaber, M.A. and Osman, M.A., 2026. Functional genomics and Pan-genome mining of endophytic Streptomyces rochei BBE1 reveal plant growth-promoting traits and biocontrol potential against banana Fusarium wilt. World Journal of Microbiology and Biotechnology, 42(2), p.78.
Yuvasri, E.A., Krishamoorthy, R., Ariyan, M., Kathirvel, S., Balachandar, D., Manimaran, G., Senthilkumar, M. and Anandham, R., 2026. Whole genome sequence analysis of Methylorubrum thiocyanatum VRI7-A4: a versatile sulfur-oxidizing bacterium with environmental stress resilience. Antonie van Leeuwenhoek, 119(5), p.97.
Gothandaraman, R., Arumugam, E., Rajasekaran, R., Mannu, J., Venkatasamy, B., Eswaran, K. and Subbarayalu, M., 2026. Genomic exploration of Bacillus thuringiensis strain T381: revealing its genetic potential against lepidopteran pests. Enzyme and Microbial Technology, p.110894.
Tom, A., Kurian, P.S., Philip, S., Mathew, D., Vijayaraghavan, R., Sumbula, V. and Varkey, M.E., 2026. Exploratory profiling of microbial communities associated with tapping panel dryness in Hevea brasiliensis. Archives of Microbiology, 208(6), p.306.
Sharanya, R., Gayathri, M., Renukadevi, P., Saranya, N., Suganthy, M., Hamed, K.E., saleh Al Tami, M., Ashraf, S. and Nakkeeran, S., 2025. Genomic insights and antiviral immunity mediated by Serratia marcescens (NMS01) reveal the potential to manage Orthotospovirus arachinecrosis (groundnut bud necrosis virus) in cowpea and tomato. Journal of Agriculture and Food Research, p.102386.
Vignesh, S., Rajadurai, G., Raghu, R., Jayakanthan, M., Mohankumar, S., Balakrishnan, N., Balasubramani, V. and Kokiladevi, E., 2025. Comprehensive Genomic Insights and Insecticidal Evaluation of Bacillus thuringiensis Strain T419 against Lepidopteran Pests. Current Microbiology, 82(12), p.589.
Dhanya, N., Prakriti, B., Ghosh, A. and Satish, L., 2025. Microbial community structure and niche differentiation in healthy and infected samples of Kappaphycus alvarezii in the commercial farming sites of Tamil Nadu coastal, India.
Preenanka, R., Sivam, V., Sasikala, R., Koombankallil, R., Raveendran, K., Jacob, J., Devadas, A.L., Ravikumar, N.K., Anbalakan, M., Chigilipalli, H. and Thangaraj, R.S., 2025. Muscle Microbiome Analysis of Indian Mackerel (Rastrelliger kanagurta) Delineated Classical and Novel Spoilage Bacteria. Journal of Food Science, 90(12), p.e70751.
Gayathri, M., Sharanya, R., Renukadevi, P., Malathi, V.G., Ghosh, A., Nallusamy, S., Varanavasiappan, S., Nakkeeran, S. and Alkahtani, S., 2025. Genomic configuration of Bacillus subtilis (NMB01) unveils its antiviral activity against Orthotospovirus arachinecrosis infecting tomato. Frontiers in plant science, 16, p.1517157.
Mookiah, S., Marimuthu, M., G K, S., Sampathrajan, V., Gnanadhas, P., Govindasamy, K. and Kolanchi, P., 2025. Untargeted metabolomics-based study of extracts from Simarouba glauca plant parts for insecticidal effects against Spodoptera frugiperda. Scientific Reports, 15(1), pp.1-20.
Veeranan Arun Giridhari, V., Uma Maheswari, T., Vanniarajan, C., Hariharan, T. and Karthikeyan, S., 2025. Probing the metagenome and nutritional composition of idli batter fortified with electrolytic iron for addressing anaemia. Journal of Food Science and Technology, 62(8), pp.1481-1490.
Kumar, A., Rajasekaran, R., Krishnamoorthy, I., Alagarswamy, S., Chandrakumar, K., Pulapet, S., Markkandan, K., Kanagarajan, S. and Narayanan, M.B., 2025. Comparative chloroplast genomics of wild-type Panicum miliaceum cv. ATL1 and its M4 mutant line: Insights for molecular breeding applications. BMC Plant Biology, 25(1), p.1023.
Murugavel, K., Karthikeyan, G., Raveendran, M., Sendhilvel, V., Sudha, A., Karthiba, L. and Rajendran, L., 2025. Insights in to the genome sequence of an endophytic Bacillus amyloliquefaciens (TNOB22) from tea and its promising biocontrol activity against major diseases of tea. Physiological and Molecular Plant Pathology, 138, p.102680.
Venkatesan, R.T., Rani, A., Umesh, S., Sushil, K., Kumar, D.A., Sowmya, P., Kesavan, M., Singh, R.B., Panchasara, H.H., Kumar, S.A. and Chhaya, R., 2025. Genome-wide scan for SNPs and selective sweeps reveals candidate genes and QTLs for milk production and reproduction traits in Indian Kankrej cattle. 3 Biotech, 15(4), p.90.
Gothandaraman, R., Rajasekaran, R., Mannu, J., Venkatasamy, B., Eswaran, K. and Subbarayalu, M., 2025. Genomic and toxicity analysis of Lepidopteran toxic novel Bacillus thuringiensis strain T407. Pesticide Biochemistry and Physiology, p.106718.
Lalbiakmawia, B., Pulapet, S., Kathir, S., Lalengkimi, R., Markkandan, K., Chhandama, M.V., Nachimuthu, S.K. and Zothanzama, J., 2024. Dataset on bacterial diversity using 16S metagenome analysis in fermented rice beer from two breweries and grape wine of Mizoram, Northeast India. Data in Brief, 57, p.110932.
Ramesh, M. and Thankaraj, S.R., 2024. Genomic analysis and antibiotic resistance profiling of Bacillus amyloliquefaciens AUPP2: implication for biocontrol agent against the fruit rot of banana. Journal of Plant Pathology, pp.1-13. [View]
Balasubramanian, S., Haneen, M.A., Sharma, G. and Perumal, E., 2024. Acute copper oxide nanoparticles exposure alters zebrafish larval microbiome. Life Sciences, 336, p.122313. [View]
Alagarsamy, M., Karuppan, S., Amal, T.C. and Markkandan, K., 2024. Sequencing and analysis of the complete mitochondrial genome of Amrasca biguttula biguttula Ishida, 1913 (Hemiptera: Cicadellidae: Typhlocybinae: Empoascini). Mitochondrial DNA Part B, 9(6), pp.725-728. [View]
Koundinya, A.V.V., Muthusamy, S.K., Ajeesh, B.R., Mohan, C., Sreekumar, J., Pulapet, S., Markkandan, K. and Sheela, M.N., 2024. Elucidation of novel drought-responsive genes from tuber transcriptome of cassava under water deficit stress. South African Journal of Botany, 169, pp.255-267. [View]
Narayanan, M.B., Mohan, S.V.G., Subramanyam, P., Venkatachalam, R. and Markkandan, K., 2023. Identification of Causal Gene-Specific SNP Markers for the Development of Gynoecious Hybrids in Cucumber (Cucumis sativa L.) Using the PathoLogic Algorithm. Horticulturae, 9(3), p.389. [View]
Ramakrishnan, P., Ariyan, M., Rangasamy, A., Rajasekaran, R., Ramasamy, K., Murugaiyan, S. and Janahiraman, V., 2023. Draft Genome Sequence of Enterobacter cloacae S23 a Plant Growth-promoting Passenger Endophytic Bacterium Isolated from Groundnut Nodule Possesses Stress Tolerance Traits. Current Genomics, 24(1), p.36. [View]
Lee, I., Kim, E., Choi, S., Kim, D., Hong, W., Choi, J., Choi, H., Kim, J., Sable, G.A., Markkandan, K. and Lim, D., 2021. A Raf-like kinase is required for smoke-induced seed dormancy in Arabidopsis thaliana. Proceedings of the National Academy of Sciences, 118(14). [View]
Kim, S.M., Markkandan, K., Lee, J.Y., Kim, G.W. and Yoo, J.Y., 2020. Transcriptome Profiling Associated with Carcass Quality of Loin Muscles in Crossbred Pigs. Animals, 10(8), p.1279. [View]
Yoo, S.I., Lee, H.Y., Markkandan, K., Moon, S., Ahn, Y.J., Ji, S., Ko, J., Kim, S.J., Ryu, H. and Hong, C.P., 2019. Comparative transcriptome analysis identified candidate genes involved in mycelium browning in Lentinula edodes. BMC genomics, 20(1), p.121. [View]
Kim, M., Markkandan, K., Han, N.Y., Park, J.M., Lee, J.S., Lee, H. and Sohn, Y.C., 2019. Neural ganglia transcriptome and peptidome associated with sexual maturation in female pacific abalone (Haliotis discus hannai). Genes, 10(4), p.268. [View]
Lee, J.H., Markkandan, K., Kim, I.W., Kim, S.Y., Seo, M., Kim, M.A., Kim, S.H. and Hwang, J.S., 2019. De novo assembly and functional annotation of the emma field cricket (Teleogryllus emma) transcriptome. Journal of Asia-Pacific Entomology, 22(1), pp.1-5. [View]
Saha, S., Jeon, B.H., Kurade, M.B., Chatterjee, P.K., Chang, S.W., Markkandan, K., Salama, E.S., Govindwar, S.P. and Roh, H.S., 2019. Microbial acclimatization to lipidic-waste facilitates the efficacy of acidogenic fermentation. Chemical Engineering Journal, 358, pp.188-196. [View]
Markkandan, K., Lim, H.J., Lee, D.J., Shin, I.G., Yoo, S.I., Dang, C., Hong, C.P. and Ahn, K., 2018. Data on transcriptome profiling of circulating microRNAs in dairy cattle. Data in brief, 21, pp.775-778. [View]
Markkandan, K., Ahn, K., Lee, D.J., Kim, T.I., Dang, C., Hong, S.E., Yoon, H.B., Lim, H.J. and Hong, C.P., 2018. Profiling and identification of pregnancy-associated circulating microRNAs in dairy cattle. Genes & genomics, 40(10), pp.1111-1117. [View]
Choi, B.S., Kim, Y.J., Markkandan, K., Koo, Y.J., Song, J.T. and Seo, H.S., 2018. GW2 functions as an E3 ubiquitin ligase for rice expansin-like 1. International journal of molecular sciences, 19(7), p.1904. [View]
Lee, J., Lim, J.H., Park, J., Youn, S.H., Oh, H.J., Kim, J.H., Kim, M.K., Cho, H., Yoon, J.E., Kim, S. and Markkandan, K., 2018. First Investigation of Microbial Community Composition in the Bridge (Gadeok Channel) between the Jinhae-Masan Bay and the South Sea of Korea. Ocean Science Journal, 53(2), pp.251-260. [View]
Hwang, J.Y., Markkandan, K., Kwon, M.G., Seo, J.S., Yoo, S.I., Hwang, S.D., Son, M.H. and Park, J., 2018. Transcriptome analysis of olive flounder (Paralichthys olivaceus) head kidney infected with moderate and high virulent strains of infectious viral hemorrhagic septicaemia virus (VHSV). Fish & shellfish immunology, 76, pp.293-304. [View]
Markkandan, K., Yoo, S.I., Cho, Y.C. and Lee, D.W., 2018. Genome-Wide Identification of Insertion and Deletion Markers in Chinese Commercial Rice Cultivars, Based on Next-Generation Sequencing Data. Agronomy, 8(4), p.36. [View]
Hwang, J.Y., Markkandan, K., Han, K., Kwon, M.G., Seo, J.S., Yoo, S.I., Hwang, S.D., Ji, B.Y., Son, M.H. and Park, J.H., 2018. Temperature-dependent immune response of olive flounder (Paralichthys olivaceus) infected with viral hemorrhagic septicemia virus (VHSV). Genes & genomics, 40(3), pp.315-320. [View]
Ahn, Y.J., Markkandan, K., Baek, I.P., Mun, S., Lee, W., Kim, H.S. and Han, K., 2018. An efficient and tunable parameter to improve variant calling for whole genome and exome sequencing data. Genes & genomics, 40(1), pp.39-47. [View]
Mun, S., Kim, Y.J., Markkandan, K., Shin, W., Oh, S., Woo, J., Yoo, J., An, H. and Han, K., 2017. The whole-genome and transcriptome of the Manila clam (Ruditapes philippinarum). Genome biology and evolution, 9(6), pp.1487-1498. [View]
Sohn, H.B., Kim, S.J., Hwang, T.Y., Park, H.M., Lee, Y.Y., Markkandan, K., Lee, D., Lee, S., Hong, S.Y., Song, Y.H. and Koo, B.C., 2017. Barcode system for genetic identification of soybean [Glycine max (L.) Merrill] cultivars using InDel markers specific to dense variation blocks. Frontiers in plant science, 8, p.520. [View]
Kim, I.W., Markkandan, K., Lee, J.H., Subramaniyam, S., Yoo, S., Park, J. and Hwang, J.S., 2016. Transcriptome profiling and in silico analysis of the antimicrobial peptides of the grasshopper Oxya chinensis sinuosa. J Microbiol Biotechnol, 26, pp.1863-1870. [View]
Shin, Y., Jung, H.J., Jung, M., Yoo, S., Subramaniyam, S., Markkandan, K., Kang, J.M., Rai, R., Park, J. and Kim, J.J., 2016. Discovery of gene sources for economic traits in Hanwoo by whole-genome resequencing. Asian-Australasian journal of animal sciences, 29(9), p.1353. [View]
Nam, B.H., Jung, M., Subramaniyam, S., Yoo, S.I., Markkandan, K., Moon, J.Y., Kim, Y.O., Kim, D.G., An, C.M., Shin, Y. and Jung, H.J., 2016. Transcriptome analysis revealed changes of multiple genes involved in Haliotis discus hannai innate immunity during Vibrio parahemolyticus infection. PloS one, 11(4). [View]
Kesavan, M., Song, J.T. and Seo, H.S., 2013. Seed size: a priority trait in cereal crops. Physiologia Plantarum, 147(2), pp.113-120. [View]
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